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    Rabep1 rabaptin, RAB GTPase binding effector protein 1 [ Urocitellus parryii (Arctic ground squirrel) ]

    Gene ID: 113186444, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Rabep1
    Gene description
    rabaptin, RAB GTPase binding effector protein 1
    See related
    Ensembl:ENSUPAG00010019239
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Urocitellus parryii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
    Orthologs
    human mouse all
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    Genomic context

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    See Rabep1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540017.1 (2254053..2351573)

    NW_020540017.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 37A pseudogene Neighboring gene SLP adaptor and CSK interacting membrane protein Neighboring gene U6 spliceosomal RNA Neighboring gene nucleoporin 88 Neighboring gene RPA interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020540017 Unplaced Scaffold Reference ASM342692v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab GTPase-binding effector protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342692v1

    Genomic

    1. NW_020540017.1 Reference ASM342692v1

      Range
      2254053..2351573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026393895.1 → XP_026249680.1  rab GTPase-binding effector protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2I952, A0A8D2I9Q1
      Related
      ENSUPAP00010024394.1, ENSUPAT00010027759.1
      Conserved Domains (2) summary
      pfam03528
      Location:9 → 495
      Rabaptin
      pfam09311
      Location:533 → 839
      Rab5-bind; Rabaptin-like protein

    2. XM_026393896.1 → XP_026249681.1  rab GTPase-binding effector protein 1 isoform X2

      Conserved Domains (2) summary
      pfam03528
      Location:9 → 495
      Rabaptin
      pfam09311
      Location:533 → 559
      Rab5-bind; Rabaptin-like protein
    Nucleotide Protein
    Heading Accession and Version

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