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    LOC121172605 U-box domain-containing protein 13-like [ Glycine max (soybean) ]

    Gene ID: 121172605, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121172605
    Gene description
    U-box domain-containing protein 13-like
    Locus tag
    GLYMA_18G176400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC121172605 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (42379239..42386176, complement)

    Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene dof zinc finger protein DOF2.4 Neighboring gene U-box domain-containing protein 13 Neighboring gene putative E3 ubiquitin-protein ligase XBAT31 Neighboring gene uncharacterized protein At3g17950

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038254.2 Chromosome 18 Reference Glycine_max_v4.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 13-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42379239..42386176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026126932.2 → XP_025982717.1  U-box domain-containing protein 13-like isoform X2

      Conserved Domains (2) summary
      smart00504
      Location:260 → 323
      Ubox; Modified RING finger domain
      cd16664
      Location:263 → 301
      RING-Ubox_PUB; U-box domain, a modified RING finger [structural motif]

    2. XM_026126931.2 → XP_025982716.1  U-box domain-containing protein 13-like isoform X1

      Conserved Domains (2) summary
      smart00504
      Location:263 → 326
      Ubox; Modified RING finger domain
      cd16664
      Location:266 → 304
      RING-Ubox_PUB; U-box domain, a modified RING finger [structural motif]

    3. XM_041011901.1 → XP_040867835.1  U-box domain-containing protein 13-like isoform X4

      Conserved Domains (1) summary
      smart00504
      Location:260 → 323
      Ubox; Modified RING finger domain

    4. XM_026126933.2 → XP_025982718.1  U-box domain-containing protein 13-like isoform X3

      Conserved Domains (1) summary
      smart00504
      Location:263 → 326
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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