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    LOC101248166 ARF guanine-nucleotide exchange factor GNOM [ Solanum lycopersicum (tomato) ]

    Gene ID: 101248166, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101248166
    Gene description
    ARF guanine-nucleotide exchange factor GNOM
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101248166 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (53404114..53412274, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (37818224..37826524, complement)

    Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101248449 Neighboring gene uncharacterized LOC112940924 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ethylene response factor H.19 Neighboring gene SNF1 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ARF guanine-nucleotide exchange factor GNOM

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

      Range
      53404114..53412274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026029266.2 → XP_025885051.1  ARF guanine-nucleotide exchange factor GNOM

      UniProtKB/TrEMBL
      A0A3Q7F1V5
      Conserved Domains (2) summary
      pfam01369
      Location:552 → 735
      Sec7; Sec7 domain
      pfam12783
      Location:306 → 460
      Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal

    2. XM_010318817.4 → XP_010317119.1  ARF guanine-nucleotide exchange factor GNOM

      See identical proteins and their annotated locations for XP_010317119.1

      UniProtKB/TrEMBL
      A0A3Q7F1V5
      Conserved Domains (2) summary
      pfam01369
      Location:552 → 735
      Sec7; Sec7 domain
      pfam12783
      Location:306 → 460
      Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal

    3. XM_026029265.2 → XP_025885050.1  ARF guanine-nucleotide exchange factor GNOM

      UniProtKB/TrEMBL
      A0A3Q7F1V5
      Conserved Domains (2) summary
      pfam01369
      Location:552 → 735
      Sec7; Sec7 domain
      pfam12783
      Location:306 → 460
      Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal
    Nucleotide Protein
    Heading Accession and Version

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