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    EPHA1 EPH receptor A1 [ Vulpes vulpes (red fox) ]

    Gene ID: 112934824, updated on 11-Apr-2024

    Summary

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    Gene symbol
    EPHA1
    Gene description
    EPH receptor A1
    See related
    Ensembl:ENSVVUG00000016175
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    See EPHA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356585.1 (251868..266943, complement)

    NW_020356585.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 131 member B Neighboring gene zyxin Neighboring gene uncharacterized LOC112934836 Neighboring gene taste receptor type 2 member 143-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356585 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin type-A receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356585.1 Reference VulVul2.2 Primary Assembly

      Range
      251868..266943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026018346.1 → XP_025874131.1  ephrin type-A receptor 1

      UniProtKB/TrEMBL
      A0A3Q7U8A8
      Related
      ENSVVUP00000022028.1, ENSVVUT00000029214.1
      Conserved Domains (6) summary
      cd09542
      Location:882 → 944
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      cd10479
      Location:1 → 173
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd12841
      Location:506 → 543
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
      cd00063
      Location:423 → 505
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:304 → 401
      fn3; Fibronectin type III domain
      cl21453
      Location:589 → 854
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein Strain
    Heading Accession and Version

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