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    LOC112892658 probable trehalose-phosphate phosphatase 4 [ Panicum hallii ]

    Gene ID: 112892658, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC112892658
    Gene description
    probable trehalose-phosphate phosphatase 4
    Locus tag
    PAHAL_1G399900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panicum hallii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
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    Genomic context

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    See LOC112892658 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current PHallii_v3.1 (GCF_002211085.1) 1 NC_038042.1 (55747129..55750151)

    Chromosome 1 - NC_038042.1Genomic Context describing neighboring genes Neighboring gene 3',5'-nucleoside bisphosphate phosphatase-like Neighboring gene ethylene-responsive transcription factor ERF060-like Neighboring gene uncharacterized LOC112900106 Neighboring gene PLAT domain-containing protein 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038042.1 Chromosome 1 Reference PHallii_v3.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable trehalose-phosphate phosphatase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panicum hallii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PHallii_v3.1

    Genomic

    1. NC_038042.1 Reference PHallii_v3.1

      Range
      55747129..55750151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025959795.1 → XP_025815580.1  probable trehalose-phosphate phosphatase 4

      UniProtKB/TrEMBL
      A0A2S3GTA5, A0A2T7FC63
      Conserved Domains (1) summary
      cl21460
      Location:55 → 347
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

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