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    PSMA5 proteasome 20S subunit alpha 5 [ Puma concolor (puma) ]

    Gene ID: 112871938, updated on 15-Mar-2024

    Summary

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    Gene symbol
    PSMA5
    Gene description
    proteasome 20S subunit alpha 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puma concolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
    Orthologs
    human mouse all
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    Genomic context

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    See PSMA5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020338243.1 (93907169..93931093, complement)

    NW_020338243.1Genomic Context describing neighboring genes Neighboring gene myosin binding protein H like Neighboring gene sortilin 1 Neighboring gene synaptophysin like 2 Neighboring gene ataxin 7 like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020338243 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-5
    Names
    proteasome subunit alpha 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PumCon1.0 Primary Assembly

    Genomic

    1. NW_020338243.1 Reference PumCon1.0 Primary Assembly

      Range
      93907169..93931093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025935046.1 → XP_025790831.1  proteasome subunit alpha type-5

      UniProtKB/TrEMBL
      A0A6P6IRH1
      Conserved Domains (1) summary
      cd03753
      Location:8 → 220
      proteasome_alpha_type_5; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
    Nucleotide Protein
    Heading Accession and Version

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