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    LOC112733310 probable trehalose-phosphate phosphatase J [ Arachis hypogaea (peanut) ]

    Gene ID: 112733310, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC112733310
    Gene description
    probable trehalose-phosphate phosphatase J
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arachis hypogaea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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    Genomic context

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    See LOC112733310 in Genome Data Viewer
    Location:
    chromosome: Arahy.13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.13 NC_037630.1 (127890103..127892726)

    Chromosome Arahy.13 - NC_037630.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF060 Neighboring gene inactive TPR repeat-containing thioredoxin TTL3 Neighboring gene uncharacterized LOC112735389 Neighboring gene uncharacterized LOC112733314

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037630.1 Chromosome Arahy.13 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable trehalose-phosphate phosphatase J

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Genomic

    1. NC_037630.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

      Range
      127890103..127892726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025782231.2 → XP_025638016.1  probable trehalose-phosphate phosphatase J

      Conserved Domains (1) summary
      cl21460
      Location:4 → 347
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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