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    SGCA sarcoglycan alpha [ Bubalus bubalis (water buffalo) ]

    Gene ID: 102393085, updated on 10-Mar-2024

    Summary

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    Gene symbol
    SGCA
    Gene description
    sarcoglycan alpha
    See related
    EnsemblRapid:ENSBALG00030029626
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bubalus bubalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
    Orthologs
    human mouse all
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    Genomic context

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    See SGCA in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (26621760..26631500)
    102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (26836785..26846527)

    Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC123332621 Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene collagen type I alpha 1 chain Neighboring gene transmembrane protein 92

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NDDB_SH_1 Primary Assembly

    Genomic

    1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

      Range
      26621760..26631500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025280327.3 → XP_025136112.1  alpha-sarcoglycan

      Related
      ENSBALP00030055032.1, ENSBALT00030082142.1
      Conserved Domains (1) summary
      pfam05510
      Location:27 → 351
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    2. XM_025280326.3 → XP_025136111.1  alpha-sarcoglycan

      Conserved Domains (1) summary
      pfam05510
      Location:27 → 351
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

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