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    LOC11425290 small nuclear ribonucleoprotein Sm D2 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11425290, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11425290
    Gene description
    small nuclear ribonucleoprotein Sm D2
    Locus tag
    MtrunA17_Chr5g0447361
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11425290 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (43661228..43663515)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (42468852..42471151)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic Neighboring gene something about silencing protein 10 Neighboring gene uncharacterized LOC120580701 Neighboring gene transcriptional regulator STERILE APETALA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein Sm D2
    Names
    putative small nuclear ribonucleoprotein Sm D2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      43661228..43663515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024784618.2 → XP_024640386.1  small nuclear ribonucleoprotein Sm D2 isoform X2

      UniProtKB/TrEMBL
      B7FMN6, I3SEP6
      Conserved Domains (1) summary
      cd01720
      Location:7 → 96
      Sm_D2; Sm protein D2

    2. XM_024784614.2 → XP_024640382.1  small nuclear ribonucleoprotein Sm D2 isoform X1

      UniProtKB/TrEMBL
      A0A396HXR2, B7FMN6
      Conserved Domains (1) summary
      cd01720
      Location:13 → 102
      Sm_D2; Sm protein D2

    3. XM_024784613.2 → XP_024640381.1  small nuclear ribonucleoprotein Sm D2 isoform X1

      UniProtKB/TrEMBL
      A0A396HXR2, B7FMN6
      Conserved Domains (1) summary
      cd01720
      Location:13 → 102
      Sm_D2; Sm protein D2

    4. XM_024784616.2 → XP_024640384.1  small nuclear ribonucleoprotein Sm D2 isoform X2

      UniProtKB/TrEMBL
      B7FMN6, I3SEP6
      Conserved Domains (1) summary
      cd01720
      Location:7 → 96
      Sm_D2; Sm protein D2

    5. XM_024784617.2 → XP_024640385.1  small nuclear ribonucleoprotein Sm D2 isoform X2

      UniProtKB/TrEMBL
      B7FMN6, I3SEP6
      Conserved Domains (1) summary
      cd01720
      Location:7 → 96
      Sm_D2; Sm protein D2

    6. XM_024784615.2 → XP_024640383.1  small nuclear ribonucleoprotein Sm D2 isoform X1

      UniProtKB/TrEMBL
      A0A396HXR2, B7FMN6
      Conserved Domains (1) summary
      cd01720
      Location:13 → 102
      Sm_D2; Sm protein D2
    Nucleotide Protein
    Heading Accession and Version

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