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    LOC11436413 pentatricopeptide repeat-containing protein At2g30780 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11436413, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11436413
    Gene description
    pentatricopeptide repeat-containing protein At2g30780
    Locus tag
    MtrunA17_Chr5g0433101
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11436413 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (33662793..33668517, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (32368887..32374752, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion protein SCC4 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC11435331

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g30780
    Names
    PPR containing plant protein
    putative pentatricopeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      33662793..33668517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024784599.2 → XP_024640367.1  pentatricopeptide repeat-containing protein At2g30780 isoform X2

      UniProtKB/TrEMBL
      A0A396HTT5
      Conserved Domains (4) summary
      sd00004
      Location:357 → 384
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:319 → 367
      PPR_2; PPR repeat family
      cl15354
      Location:72 → 113
      CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
      cl25449
      Location:388 → 437
      PPR_2; PPR repeat family

    2. XM_039834421.1 → XP_039690355.1  pentatricopeptide repeat-containing protein At2g30780 isoform X1

      UniProtKB/TrEMBL
      A0A396HTT5
      Conserved Domains (4) summary
      PLN03077
      Location:321 → 630
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:357 → 384
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:319 → 367
      PPR_2; PPR repeat family
      cl15354
      Location:69 → 113
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

    3. XM_024784597.2 → XP_024640365.1  pentatricopeptide repeat-containing protein At2g30780 isoform X1

      UniProtKB/TrEMBL
      A0A396HTT5
      Conserved Domains (4) summary
      PLN03077
      Location:321 → 630
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:357 → 384
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:319 → 367
      PPR_2; PPR repeat family
      cl15354
      Location:69 → 113
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

    4. XM_024784598.2 → XP_024640366.1  pentatricopeptide repeat-containing protein At2g30780 isoform X1

      UniProtKB/TrEMBL
      A0A396HTT5
      Conserved Domains (4) summary
      PLN03077
      Location:321 → 630
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:357 → 384
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:319 → 367
      PPR_2; PPR repeat family
      cl15354
      Location:69 → 113
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

    5. XM_024784595.2 → XP_024640363.1  pentatricopeptide repeat-containing protein At2g30780 isoform X1

      UniProtKB/TrEMBL
      A0A396HTT5
      Conserved Domains (4) summary
      PLN03077
      Location:321 → 630
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:357 → 384
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:319 → 367
      PPR_2; PPR repeat family
      cl15354
      Location:69 → 113
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
    Nucleotide Protein
    Heading Accession and Version

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