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    LOC25491130 protein phosphatase 2C 57 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25491130, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25491130
    Gene description
    protein phosphatase 2C 57
    Locus tag
    MtrunA17_Chr3g0127091
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25491130 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (45266582..45270716)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (41806343..41810585)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein RCF3 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 Neighboring gene importin subunit beta-1 Neighboring gene uncharacterized LOC25491132

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 2C 57
    Names
    protein phosphatase 2C-like protein
    putative protein-serine/threonine phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      45266582..45270716
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024777681.2 → XP_024633449.1  protein phosphatase 2C 57 isoform X1

      UniProtKB/TrEMBL
      I3SE45
      Conserved Domains (1) summary
      cd00143
      Location:59 → 353
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    2. XM_013605975.3 → XP_013461429.1  protein phosphatase 2C 57 isoform X2

      UniProtKB/TrEMBL
      A0A072V0D5, I3SE45
      Conserved Domains (1) summary
      cd00143
      Location:59 → 349
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    Nucleotide Protein
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