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    LOC7470392 26S proteasome non-ATPase regulatory subunit 4 homolog [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7470392, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7470392
    Gene description
    26S proteasome non-ATPase regulatory subunit 4 homolog
    Locus tag
    POPTR_004G173700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (18886923..18890599)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (19230315..19233986)

    Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-1 Neighboring gene uncharacterized LOC7470391 Neighboring gene actin-depolymerizing factor 5 Neighboring gene subtilisin-like protease SBT1.6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      18886923..18890599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024598653.2 → XP_024454421.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A2K2AW38, A9PGE8
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    2. XM_024598654.2 → XP_024454422.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A2K2AW35, A9PGE8
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...
    Nucleotide Protein
    Heading Accession and Version

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