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    LOC7471719 probable WRKY transcription factor 2 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7471719, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC7471719
    Gene description
    probable WRKY transcription factor 2
    Locus tag
    POPTR_001G472800v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7471719 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (49576411..49581844, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (50403479..50408961, complement)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g26450 Neighboring gene chloride channel protein CLC-f Neighboring gene receptor-like protein kinase BRI1-like 3 Neighboring gene peroxisome biogenesis protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 2
    Names
    WRKY family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      49576411..49581844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002300560.4 → XP_002300596.2  probable WRKY transcription factor 2 isoform X3

      See identical proteins and their annotated locations for XP_002300596.2

      UniProtKB/TrEMBL
      A0A3N7EI29, B9GHY9
      Conserved Domains (1) summary
      pfam03106
      Location:524 → 579
      WRKY; WRKY DNA -binding domain

    2. XM_024585466.2 → XP_024441234.1  probable WRKY transcription factor 2 isoform X2

      UniProtKB/TrEMBL
      A0A2K2CEK8, A0A3N7EI29
      Conserved Domains (1) summary
      pfam03106
      Location:532 → 587
      WRKY; WRKY DNA -binding domain

    3. XM_024585445.2 → XP_024441213.1  probable WRKY transcription factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A2K2CEK5, A0A3N7EI29
      Conserved Domains (1) summary
      pfam03106
      Location:532 → 587
      WRKY; WRKY DNA -binding domain

    4. XM_024585451.2 → XP_024441219.1  probable WRKY transcription factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A2K2CEK5, A0A3N7EI29
      Conserved Domains (1) summary
      pfam03106
      Location:532 → 587
      WRKY; WRKY DNA -binding domain

    5. XM_052454988.1 → XP_052310948.1  probable WRKY transcription factor 2 isoform X3

      UniProtKB/TrEMBL
      B9GHY9

    6. XM_024585457.2 → XP_024441225.1  probable WRKY transcription factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A2K2CEK5, A0A3N7EI29
      Conserved Domains (1) summary
      pfam03106
      Location:532 → 587
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version

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