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    LOC112276232 ABSCISIC ACID-INSENSITIVE 5-like protein 2 [ Physcomitrium patens ]

    Gene ID: 112276232, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112276232
    Gene description
    ABSCISIC ACID-INSENSITIVE 5-like protein 2
    Locus tag
    PHYPA_028308
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112276232 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 23 NC_037275.1 (12697171..12702436)

    Chromosome 23 - NC_037275.1Genomic Context describing neighboring genes Neighboring gene sphingolipid delta(4)-desaturase DES1-like Neighboring gene uncharacterized LOC112276114 Neighboring gene uncharacterized LOC112275984 Neighboring gene fumarate hydratase 1, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037275.1 Chromosome 23 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABSCISIC ACID-INSENSITIVE 5-like protein 2; ABSCISIC ACID-INSENSITIVE 5-like protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037275.1 Reference Phypa V3 Primary Assembly

      Range
      12697171..12702436
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024507360.1 → XP_024363128.1  ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2K1IK10
      Conserved Domains (1) summary
      cd14707
      Location:368 → 422
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_024507358.1 → XP_024363126.1  ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2K1IK10
      Conserved Domains (1) summary
      cd14707
      Location:369 → 423
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    3. XM_024507361.1 → XP_024363129.1  ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A2K1IK10, A0A7I4CF91
      Conserved Domains (1) summary
      cd14707
      Location:369 → 423
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    4. XM_024507359.1 → XP_024363127.1  ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2K1IK10
      Conserved Domains (1) summary
      cd14707
      Location:369 → 423
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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