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    LOC112294843 homeobox-leucine zipper protein HOX20-like [ Physcomitrium patens ]

    Gene ID: 112294843, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112294843
    Gene description
    homeobox-leucine zipper protein HOX20-like
    Locus tag
    PHYPA_022262
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112294843 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 17 NC_037269.1 (12206148..12208648, complement)

    Chromosome 17 - NC_037269.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112294893 Neighboring gene tetratricopeptide repeat protein 6-like Neighboring gene uncharacterized LOC112294239 Neighboring gene homeobox-leucine zipper protein HAT5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037269.1 Chromosome 17 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX20-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037269.1 Reference Phypa V3 Primary Assembly

      Range
      12206148..12208648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024545757.1 → XP_024401525.1  homeobox-leucine zipper protein HOX20-like

      UniProtKB/TrEMBL
      A0A2K1J4G0, A0A7I4B9H7
      Conserved Domains (2) summary
      smart00389
      Location:92 → 145
      HOX; Homeodomain
      pfam02183
      Location:147 → 187
      HALZ; Homeobox associated leucine zipper
    Nucleotide Protein
    Heading Accession and Version

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