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    si:dkey-121b10.7 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Oryzias melastigma (Indian medaka) ]

    Gene ID: 112153860, updated on 10-Jul-2024

    Summary

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    Gene symbol
    si:dkey-121b10.7
    Gene description
    heparan sulfate glucosamine 3-O-sulfotransferase 6
    See related
    EnsemblRapid:ENSOMEG00005006532
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias melastigma
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See si:dkey-121b10.7 in Genome Data Viewer
    Location:
    chromosome: LG19
    Exon count:
    2
    Annotation release Status Assembly LG Location
    101 current ASM292280v2 (GCF_002922805.2) LG19 NC_050530.1 (1817821..1844363, complement)
    100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096090.1 (1817816..1844175, complement)

    Linkage Group LG19 - NC_050530.1Genomic Context describing neighboring genes Neighboring gene BRICHOS domain containing 5 Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene meiosis specific with OB-fold Neighboring gene methionine sulfoxide reductase B1b Neighboring gene neuralized E3 ubiquitin protein ligase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heparan sulfate glucosamine 3-O-sulfotransferase 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM292280v2 Primary Assembly

    Genomic

    1. NC_050530.1 Reference ASM292280v2 Primary Assembly

      Range
      1817821..1844363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024284304.2 → XP_024140072.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

      UniProtKB/TrEMBL
      A0A3B3BMA5, A0A834C7T2
      Related
      ENSOMEP00005013595.1, ENSOMET00005015231.1
      Conserved Domains (1) summary
      pfam00685
      Location:98 → 334
      Sulfotransfer_1; Sulfotransferase domain
    Nucleotide Protein Strain
    Heading Accession and Version

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