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    LOC18029470 protein BREAST CANCER SUSCEPTIBILITY 1 homolog [ Eutrema salsugineum ]

    Gene ID: 18029470, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC18029470
    Gene description
    protein BREAST CANCER SUSCEPTIBILITY 1 homolog
    Locus tag
    EUTSA_v10024364mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eutrema salsugineum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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    Genomic context

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    See LOC18029470 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256909.1 (8245898..8250491, complement)

    NW_006256909.1Genomic Context describing neighboring genes Neighboring gene riboflavin biosynthesis protein PYRD, chloroplastic Neighboring gene adrenodoxin-like protein 2, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At4g21065 Neighboring gene hydroxyproline O-galactosyltransferase GALT2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006256909 Unplaced Scaffold Reference Eutsalg1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BRCA1-A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of BRCA1-BARD1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein BREAST CANCER SUSCEPTIBILITY 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Eutsalg1_0

    Genomic

    1. NW_006256909.1 Reference Eutsalg1_0

      Range
      8245898..8250491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024149918.1 → XP_024005686.1  protein BREAST CANCER SUSCEPTIBILITY 1 homolog

      UniProtKB/TrEMBL
      V4MFK4
      Conserved Domains (5) summary
      smart00292
      Location:829 → 918
      BRCT; breast cancer carboxy-terminal domain
      pfam00533
      Location:709 → 793
      BRCT; BRCA1 C Terminus (BRCT) domain
      cd16564
      Location:15 → 54
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins
      cl22851
      Location:587 → 665
      PHD_SF; PHD finger superfamily
      cl28410
      Location:14 → 239
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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