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    LOC112046545 paired box protein Pax-6-like [ Bicyclus anynana (squinting bush brown) ]

    Gene ID: 112046545, updated on 13-Dec-2023

    Summary

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    Gene symbol
    LOC112046545
    Gene description
    paired box protein Pax-6-like
    See related
    EnsemblRapid:ENSINYG00000022469
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bicyclus anynana
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Mycalesina; Bicyclus
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    Genomic context

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    See LOC112046545 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2022_12 current ilBicAnyn1.1 (GCF_947172395.1) 25 NC_069107.1 (3890706..3902486)
    100 previous assembly Bicyclus_anynana_v1.2 (GCF_900239965.1) Unplaced Scaffold NW_019862861.1 (870263..881384)

    Chromosome 25 - NC_069107.1Genomic Context describing neighboring genes Neighboring gene transcriptional activator cubitus interruptus Neighboring gene Brefeldin-resistant Arf-GEF family protein schizo Neighboring gene uncharacterized LOC112046552 Neighboring gene uncharacterized LOC128199488 Neighboring gene Glial cell line-derived neurotrophic family receptor-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_947172395.1-RS_2022_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilBicAnyn1.1

    Genomic

    1. NC_069107.1 Reference ilBicAnyn1.1

      Range
      3890706..3902486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024083213.2 → XP_023938981.1  paired box protein Pax-6-like

      UniProtKB/TrEMBL
      A0A6J1N7J9
      Related
      ENSINYP00000027358.1, ENSINYT00000038681.1
      Conserved Domains (2) summary
      pfam00046
      Location:102 → 154
      Homeobox; Homeobox domain
      cl27820
      Location:71 → 186
      Abdominal-A; Homeobox protein
    Nucleotide Protein
    Heading Accession and Version

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