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    LOC541885 NOD26-like membrane intrinsic protein 3 [ Zea mays ]

    Gene ID: 541885, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC541885
    Gene description
    NOD26-like membrane intrinsic protein 3
    Locus tag
    ZEAMMB73_Zm00001d032461
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    nip3a; NIP3-1; GRMZM2G176209
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    Genomic context

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    See LOC541885 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (229359385..229362637)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (227449827..227453079)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100281112 Neighboring gene putative cytochrome P450 superfamily protein Neighboring gene replication protein A pseudogene Neighboring gene L10-interacting MYB domain-containing protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize. Durbak AR, et al. Plant Cell, 2014 Jul. PMID 25035406, Free PMC Article
    2. Aquaporins constitute a large and highly divergent protein family in maize. Chaumont F, et al. Plant Physiol, 2001 Mar. PMID 11244102, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TLS1 is a boron (B) transport facilitator in maize, highlighting the importance of B homeostasis in meristem function.
      Title: Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aquaporin NIP3-1
    Names
    NOD26-like intrinsic protein 3-1
    NOD26-like membrane integral protein ZmNIP3-1
    PCO070928
    PCO070928(70)
    ZmNIP3-1
    tasselless1
    zmNIP3;1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111551.1 → NP_001105021.1  aquaporin NIP3-1

      See identical proteins and their annotated locations for NP_001105021.1

      Status: PROVISIONAL

      Source sequence(s)
      AF326486
      UniProtKB/Swiss-Prot
      Q9ATN1
      UniProtKB/TrEMBL
      A0A1R3M9B0, A0A317Y1T2, A0A317Y1T8, A0A979HK10, C0PMA2
      Conserved Domains (1) summary
      PLN00026
      Location:1 → 302
      PLN00026; aquaporin NIP; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      229359385..229362637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ATN1.1 GenPept UniProtKB/Swiss-Prot:Q9ATN1

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