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    LOC111782784 small glutamine-rich tetratricopeptide repeat-containing protein beta [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111782784, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111782784
    Gene description
    small glutamine-rich tetratricopeptide repeat-containing protein beta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111782784 in Genome Data Viewer
    Location:
    chromosome: LG20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG20 NC_036657.1 (206809..211167)

    Chromosome LG20 - NC_036657.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111782781 Neighboring gene nascent polypeptide-associated complex subunit beta-like Neighboring gene kinase-interacting family protein-like Neighboring gene dehydrogenase/reductase SDR family member FEY-like Neighboring gene eukaryotic translation initiation factor 3 subunit G-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036657.1 Chromosome LG20 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small glutamine-rich tetratricopeptide repeat-containing protein beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036657.1 Reference ASM280686v2 Primary Assembly

      Range
      206809..211167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023663586.1 → XP_023519354.1  small glutamine-rich tetratricopeptide repeat-containing protein beta

      Conserved Domains (3) summary
      COG0457
      Location:123 → 226
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      cd02980
      Location:38 → 105
      TRX_Fd_family; Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH: ...
      sd00006
      Location:124 → 152
      TPR; TPR repeat [structural motif]

    RNA

    1. XR_002813189.1 RNA Sequence

    2. XR_002813191.1 RNA Sequence

    3. XR_002813190.1 RNA Sequence

    4. XR_002813192.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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