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    LOC111779543 protein NEN1-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111779543, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111779543
    Gene description
    protein NEN1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111779543 in Genome Data Viewer
    Location:
    chromosome: LG18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG18 NC_036655.1 (7423816..7427035, complement)

    Chromosome LG18 - NC_036655.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan 6-xylosyltransferase 5 Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial Neighboring gene NAC domain-containing protein 100-like Neighboring gene pentatricopeptide repeat-containing protein At4g21065-like Neighboring gene uncharacterized endoplasmic reticulum membrane protein C16E8.02-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036655.1 Chromosome LG18 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NEN1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036655.1 Reference ASM280686v2 Primary Assembly

      Range
      7423816..7427035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023659602.1 → XP_023515370.1  protein NEN1-like isoform X2

      Conserved Domains (1) summary
      cd06127
      Location:11 → 175
      DEDDh; DEDDh 3'-5' exonuclease domain family

    2. XM_023659601.1 → XP_023515369.1  protein NEN1-like isoform X1

      Conserved Domains (1) summary
      cd06127
      Location:11 → 175
      DEDDh; DEDDh 3'-5' exonuclease domain family
    Nucleotide Protein
    Heading Accession and Version

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