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    LOC111802442 endonuclease MutS2 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111802442, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111802442
    Gene description
    endonuclease MutS2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111802442 in Genome Data Viewer
    Location:
    chromosome: LG09
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG09 NC_036646.1 (7789990..7794164, complement)

    Chromosome LG09 - NC_036646.1Genomic Context describing neighboring genes Neighboring gene probable 2-carboxy-D-arabinitol-1-phosphatase Neighboring gene pentatricopeptide repeat-containing protein At4g21705, mitochondrial Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene allantoinase Neighboring gene sphingolipid delta(4)-desaturase DES1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036646.1 Chromosome LG09 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC111802442

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036646.1 Reference ASM280686v2 Primary Assembly

      Range
      7789990..7794164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023686809.1 → XP_023542577.1  uncharacterized protein LOC111802442

      Conserved Domains (1) summary
      cl27055
      Location:45 → 913
      MutS_III; MutS domain III
    Nucleotide Protein
    Heading Accession and Version

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