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    LOC111800470 two-component response regulator ARR2-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111800470, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111800470
    Gene description
    two-component response regulator ARR2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111800470 in Genome Data Viewer
    Location:
    chromosome: LG08
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG08 NC_036645.1 (1065849..1069476, complement)

    Chromosome LG08 - NC_036645.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 15-like Neighboring gene COBRA-like protein 7 Neighboring gene uncharacterized LOC111800692 Neighboring gene transfer RNA threonine (anticodon AGU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036645.1 Chromosome LG08 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ARR2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036645.1 Reference ASM280686v2 Primary Assembly

      Range
      1065849..1069476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023684178.1 → XP_023539946.1  two-component response regulator ARR2-like isoform X2

      Conserved Domains (2) summary
      TIGR01557
      Location:203 → 256
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00156
      Location:27 → 139
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

    2. XM_023684177.1 → XP_023539945.1  two-component response regulator ARR2-like isoform X1

      Conserved Domains (2) summary
      TIGR01557
      Location:203 → 256
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00156
      Location:27 → 139
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    Nucleotide Protein
    Heading Accession and Version

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