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    LOC111800252 L-type lectin-domain containing receptor kinase VIII.1 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111800252, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111800252
    Gene description
    L-type lectin-domain containing receptor kinase VIII.1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111800252 in Genome Data Viewer
    Location:
    chromosome: LG08
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG08 NC_036645.1 (8361624..8364218)

    Chromosome LG08 - NC_036645.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene peroxidase 21-like Neighboring gene DNA-binding protein S1FA-like Neighboring gene uncharacterized LOC111799794

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036645.1 Chromosome LG08 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase VIII.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036645.1 Reference ASM280686v2 Primary Assembly

      Range
      8361624..8364218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023683856.1 → XP_023539624.1  L-type lectin-domain containing receptor kinase VIII.1

      Conserved Domains (2) summary
      cd06899
      Location:40 → 265
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      cd14066
      Location:391 → 661
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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