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    LOC111794711 probable glucan endo-1,3-beta-glucosidase A6 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111794711, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111794711
    Gene description
    probable glucan endo-1,3-beta-glucosidase A6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111794711 in Genome Data Viewer
    Location:
    chromosome: LG05
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG05 NC_036642.1 (697896..699837, complement)

    Chromosome LG05 - NC_036642.1Genomic Context describing neighboring genes Neighboring gene GEM-like protein 2 Neighboring gene uncharacterized LOC111796130 Neighboring gene pentatricopeptide repeat-containing protein At3g25210, mitochondrial Neighboring gene formin-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036642.1 Chromosome LG05 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucan endo-1,3-beta-glucosidase A6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036642.1 Reference ASM280686v2 Primary Assembly

      Range
      697896..699837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023676824.1 → XP_023532592.1  probable glucan endo-1,3-beta-glucosidase A6

      Conserved Domains (2) summary
      smart00768
      Location:374 → 458
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 347
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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