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    LOC111794571 hydroxymethylglutaryl-CoA lyase, mitochondrial-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111794571, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC111794571
    Gene description
    hydroxymethylglutaryl-CoA lyase, mitochondrial-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111794571 in Genome Data Viewer
    Location:
    chromosome: LG05
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG05 NC_036642.1 (2706451..2716099, complement)

    Chromosome LG05 - NC_036642.1Genomic Context describing neighboring genes Neighboring gene cucumber peeling cupredoxin-like Neighboring gene uncharacterized LOC111794573 Neighboring gene F-box protein At2g32560-like Neighboring gene uncharacterized LOC111795041

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036642.1 Chromosome LG05 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylglutaryl-CoA lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-leucine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ketone body biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxymethylglutaryl-CoA lyase, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036642.1 Reference ASM280686v2 Primary Assembly

      Range
      2706451..2716099 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023676614.1 → XP_023532382.1  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X4

      Conserved Domains (1) summary
      PLN02746
      Location:106 → 451
      PLN02746; hydroxymethylglutaryl-CoA lyase

    2. XM_023676611.1 → XP_023532379.1  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1

      Conserved Domains (1) summary
      PLN02746
      Location:146 → 491
      PLN02746; hydroxymethylglutaryl-CoA lyase

    3. XM_023676613.1 → XP_023532381.1  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X3

      Conserved Domains (1) summary
      PLN02746
      Location:87 → 432
      PLN02746; hydroxymethylglutaryl-CoA lyase

    4. XM_023676612.1 → XP_023532380.1  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X2

      Conserved Domains (1) summary
      PLN02746
      Location:87 → 432
      PLN02746; hydroxymethylglutaryl-CoA lyase
    Nucleotide Protein
    Heading Accession and Version

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