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    LOC111792391 uncharacterized LOC111792391 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111792391, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111792391
    Gene description
    uncharacterized LOC111792391
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111792391 in Genome Data Viewer
    Location:
    chromosome: LG04
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG04 NC_036641.1 (6082893..6091860, complement)

    Chromosome LG04 - NC_036641.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At4g15540-like Neighboring gene protein ALTERED XYLOGLUCAN 4-like Neighboring gene uncharacterized LOC111792488 Neighboring gene uncharacterized LOC111792515

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036641.1 Chromosome LG04 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC111792391

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036641.1 Reference ASM280686v2 Primary Assembly

      Range
      6082893..6091860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023673802.1 → XP_023529570.1  uncharacterized protein LOC111792391 isoform X3

      Conserved Domains (3) summary
      smart00509
      Location:302 → 381
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:35 → 164
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
      cl02637
      Location:328 → 449
      TFIIS_M; Transcription factor S-II (TFIIS), central domain

    2. XM_023673800.1 → XP_023529568.1  uncharacterized protein LOC111792391 isoform X1

      Conserved Domains (3) summary
      smart00509
      Location:327 → 406
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:35 → 164
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
      cl02637
      Location:353 → 474
      TFIIS_M; Transcription factor S-II (TFIIS), central domain

    3. XM_023673801.1 → XP_023529569.1  uncharacterized protein LOC111792391 isoform X2

      Conserved Domains (3) summary
      smart00509
      Location:315 → 394
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
      cl02608
      Location:26 → 152
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
      cl02637
      Location:341 → 462
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
    Nucleotide Protein
    Heading Accession and Version

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