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    LOC111790367 transcription factor TCP17-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111790367, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111790367
    Gene description
    transcription factor TCP17-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111790367 in Genome Data Viewer
    Location:
    chromosome: LG03
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG03 NC_036640.1 (7885631..7887325)

    Chromosome LG03 - NC_036640.1Genomic Context describing neighboring genes Neighboring gene protein COBRA-like Neighboring gene receptor-like protein kinase FERONIA Neighboring gene uncharacterized LOC111790372 Neighboring gene 2-hydroxyacyl-CoA lyase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036640.1 Chromosome LG03 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TCP17-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036640.1 Reference ASM280686v2 Primary Assembly

      Range
      7885631..7887325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023671248.1 → XP_023527016.1  transcription factor TCP17-like isoform X1

      Conserved Domains (1) summary
      pfam03634
      Location:53 → 119
      TCP; TCP family transcription factor

    2. XM_023671249.1 → XP_023527017.1  transcription factor TCP17-like isoform X2

      Conserved Domains (1) summary
      pfam03634
      Location:55 → 121
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version

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