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    LOC111809165 ADP-ribosylation factor GTPase-activating protein AGD4-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111809165, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111809165
    Gene description
    ADP-ribosylation factor GTPase-activating protein AGD4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111809165 in Genome Data Viewer
    Location:
    chromosome: LG01
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG01 NC_036638.1 (5287149..5304023)

    Chromosome LG01 - NC_036638.1Genomic Context describing neighboring genes Neighboring gene inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 Neighboring gene gibberellin 2-beta-dioxygenase 8-like Neighboring gene uncharacterized LOC111805762 Neighboring gene anthranilate synthase beta subunit 1, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036638.1 Chromosome LG01 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor GTPase-activating protein AGD4-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036638.1 Reference ASM280686v2 Primary Assembly

      Range
      5287149..5304023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023695697.1 → XP_023551465.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X3

      Conserved Domains (5) summary
      cd00204
      Location:622 → 701
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:229 → 364
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:622 → 652
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:407 → 534
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:7 → 149
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    2. XM_023695563.1 → XP_023551331.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X3

      Conserved Domains (5) summary
      cd00204
      Location:622 → 701
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:229 → 364
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:622 → 652
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:407 → 534
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:7 → 149
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_023695555.1 → XP_023551323.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X2

      Conserved Domains (5) summary
      cd00204
      Location:650 → 729
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:257 → 392
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:650 → 680
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:435 → 562
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:37 → 177
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    4. XM_023695547.1 → XP_023551315.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X1

      Conserved Domains (5) summary
      cd00204
      Location:657 → 736
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:264 → 399
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:657 → 687
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:442 → 569
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:42 → 184
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    5. XM_023695576.1 → XP_023551344.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4

      Conserved Domains (5) summary
      cd00204
      Location:602 → 681
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:209 → 344
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:602 → 632
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:387 → 514
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:29 → 129
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    6. XM_023695570.1 → XP_023551338.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4

      Conserved Domains (5) summary
      cd00204
      Location:602 → 681
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:209 → 344
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:602 → 632
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:387 → 514
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:29 → 129
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    7. XM_023695590.1 → XP_023551358.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X5

      Conserved Domains (5) summary
      cd00204
      Location:560 → 639
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:167 → 302
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:560 → 590
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:345 → 472
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:2 → 87
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    8. XM_023695620.1 → XP_023551388.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X5

      Conserved Domains (5) summary
      cd00204
      Location:560 → 639
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:167 → 302
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:560 → 590
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:345 → 472
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:2 → 87
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    9. XM_023695608.1 → XP_023551376.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X5

      Conserved Domains (5) summary
      cd00204
      Location:560 → 639
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:167 → 302
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:560 → 590
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:345 → 472
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:2 → 87
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    10. XM_023695584.1 → XP_023551352.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X4

      Conserved Domains (5) summary
      cd00204
      Location:602 → 681
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:209 → 344
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:602 → 632
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:387 → 514
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:29 → 129
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    11. XM_023695599.1 → XP_023551367.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X5

      Conserved Domains (5) summary
      cd00204
      Location:560 → 639
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:167 → 302
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:560 → 590
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:345 → 472
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:2 → 87
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    12. XM_023695615.1 → XP_023551383.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X5

      Conserved Domains (5) summary
      cd00204
      Location:560 → 639
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:167 → 302
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:560 → 590
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:345 → 472
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:2 → 87
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    13. XM_023695672.1 → XP_023551440.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    14. XM_023695657.1 → XP_023551425.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    15. XM_023695639.1 → XP_023551407.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    16. XM_023695664.1 → XP_023551432.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    17. XM_023695648.1 → XP_023551416.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    18. XM_023695630.1 → XP_023551398.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X6

      Conserved Domains (5) summary
      cd00204
      Location:543 → 622
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:150 → 285
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:543 → 573
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:328 → 455
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:12 → 70
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    19. XM_023695688.1 → XP_023551456.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    20. XM_023695680.1 → XP_023551448.1  ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X7

      Conserved Domains (5) summary
      cd00204
      Location:512 → 591
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13250
      Location:119 → 254
      PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
      sd00045
      Location:512 → 542
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:297 → 424
      ArfGap; Putative GTPase activating protein for Arf
      cl12013
      Location:1 → 39
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    Nucleotide Protein
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