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    LOC111795199 protein trichome birefringence-like 19 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111795199, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111795199
    Gene description
    protein trichome birefringence-like 19
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111795199 in Genome Data Viewer
    Location:
    chromosome: LG01
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG01 NC_036638.1 (20361437..20363041)

    Chromosome LG01 - NC_036638.1Genomic Context describing neighboring genes Neighboring gene protein FLX-like 2 Neighboring gene protein trichome birefringence-like 19 Neighboring gene probable endo-1,3(4)-beta-glucanase ARB_01444 Neighboring gene proline-rich receptor-like protein kinase PERK8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036638.1 Chromosome LG01 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036638.1 Reference ASM280686v2 Primary Assembly

      Range
      20361437..20363041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023677493.1 → XP_023533261.1  protein trichome birefringence-like 19

      Conserved Domains (2) summary
      pfam13839
      Location:133 → 420
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:79 → 132
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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