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    Matn1 matrilin 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100714767, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Matn1
    Gene description
    matrilin 1
    See related
    Ensembl:ENSCPOG00000010146
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Matn1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947508.1 (23470827..23479073, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176394.1 (6236842..6244684)

    NW_026947508.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106027962 Neighboring gene uncharacterized LOC106028007 Neighboring gene uncharacterized LOC134472979 Neighboring gene lysosomal protein transmembrane 5 Neighboring gene syndecan 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cartilage matrix protein
    Names
    matrilin 1, cartilage matrix protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947508.1 Reference mCavPor4.1

      Range
      23470827..23479073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013153789.3 → XP_013009243.2  cartilage matrix protein

      UniProtKB/TrEMBL
      H0VG85
      Related
      ENSCPOP00000009111.3
      Conserved Domains (2) summary
      cd01475
      Location:38 → 261
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      cl00057
      Location:272 → 496
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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