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    EPHA1 EPH receptor A1 [ Otolemur garnettii (small-eared galago) ]

    Gene ID: 100961638, updated on 11-Apr-2024

    Summary

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    Gene symbol
    EPHA1
    Gene description
    EPH receptor A1
    See related
    Ensembl:ENSOGAG00000013593
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Otolemur garnettii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
    Orthologs
    human mouse all
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    Genomic context

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    See EPHA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852444.1 (1919153..1935002)

    NW_003852444.1Genomic Context describing neighboring genes Neighboring gene taste 2 receptor member 60 Neighboring gene taste receptor type 2 member 62-like Neighboring gene zyxin Neighboring gene family with sequence similarity 131 member B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003852444 Unplaced Scaffold Reference OtoGar3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin type-A receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OtoGar3

    Genomic

    1. NW_003852444.1 Reference OtoGar3

      Range
      1919153..1935002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003791542.3 → XP_003791590.1  ephrin type-A receptor 1 isoform X1

      UniProtKB/TrEMBL
      H0X9F1
      Related
      ENSOGAP00000012182.2, ENSOGAT00000013600.2
      Conserved Domains (7) summary
      cd09542
      Location:910 → 972
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      smart00454
      Location:909 → 974
      SAM; Sterile alpha motif
      cd10479
      Location:26 → 202
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd12841
      Location:535 → 572
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
      cd00063
      Location:452 → 534
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07714
      Location:622 → 878
      Pkinase_Tyr; Protein tyrosine kinase
      cl21453
      Location:617 → 882
      PKc_like; Protein Kinases, catalytic domain

    2. XM_023514187.1 → XP_023369955.1  ephrin type-A receptor 1 isoform X2

      UniProtKB/TrEMBL
      H0X9F1
      Conserved Domains (7) summary
      cd09542
      Location:876 → 938
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      cd12841
      Location:501 → 538
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
      cd00063
      Location:418 → 500
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:299 → 397
      fn3; Fibronectin type III domain
      pfam14575
      Location:551 → 583
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
      cl02704
      Location:26 → 188
      EphR_LBD; Ligand Binding Domain of Ephrin Receptors
      cl21453
      Location:583 → 848
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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