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    LOC111709812 PC4 and SFRS1-interacting protein [ Eurytemora carolleeae ]

    Gene ID: 111709812, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111709812
    Gene description
    PC4 and SFRS1-interacting protein
    See related
    EnsemblRapid:LOC111709812
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eurytemora carolleeae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora
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    Genomic context

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    See LOC111709812 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_10 current Eaff_2.0 (GCF_000591075.1) Unplaced Scaffold NW_019396889.1 (58607..89842)

    NW_019396889.1Genomic Context describing neighboring genes Neighboring gene glypican-6 Neighboring gene ATPase family AAA domain-containing protein 2 Neighboring gene zinc finger protein 711 Neighboring gene TATA-binding protein-associated factor 2N Neighboring gene NFX1-type zinc finger-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019396889 Unplaced Scaffold Reference Eaff_2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PC4 and SFRS1-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000591075.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Eaff_2.0

    Genomic

    1. NW_019396889.1 Reference Eaff_2.0

      Range
      58607..89842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023483725.1 → XP_023339493.1  PC4 and SFRS1-interacting protein

      Related
      XP_023339493.1, XM_023483725.1
      Conserved Domains (3) summary
      pfam11467
      Location:315 → 432
      LEDGF; Lens epithelium-derived growth factor (LEDGF)
      cl02554
      Location:5 → 84
      PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
      cl28034
      Location:136 → 339
      Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region

    RNA

    1. XR_002766941.1 RNA Sequence

      Related
      XR_002766941.1

    2. XR_002766942.1 RNA Sequence

      Related
      XR_002766942.1

    3. XR_002766944.1 RNA Sequence

      Related
      XR_002766944.1

    4. XR_002766943.1 RNA Sequence

      Related
      XR_002766943.1

    5. XR_002766945.1 RNA Sequence

      Related
      XR_002766945.1

    6. XR_002766946.1 RNA Sequence

      Related
      XR_002766946.1

    7. XR_002766947.1 RNA Sequence

      Related
      XR_002766947.1
    Nucleotide Protein
    Heading Accession and Version

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