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    LOC102226204 troponin I, fast skeletal muscle-like [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102226204, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC102226204
    Gene description
    troponin I, fast skeletal muscle-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Genomic context

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    See LOC102226204 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 2 NC_036444.1 (30193612..30206918)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005374994.1 (514..4922)

    Chromosome 2 - NC_036444.1Genomic Context describing neighboring genes Neighboring gene troponin I, fast skeletal muscle-like Neighboring gene troponin I, fast skeletal muscle-like Neighboring gene troponin I, fast skeletal muscle-like Neighboring gene uncharacterized LOC111611465 Neighboring gene lymphocyte specific protein 1 a Neighboring gene proline rich 33

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of troponin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    troponin I, fast skeletal muscle-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036444.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      30193612..30206918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023348317.1 → XP_023204085.1  troponin I, fast skeletal muscle-like

      UniProtKB/TrEMBL
      A0A3B5QM30
      Conserved Domains (1) summary
      pfam00992
      Location:12 → 141
      Troponin

    2. XM_023348318.1 → XP_023204086.1  troponin I, fast skeletal muscle-like

      UniProtKB/TrEMBL
      A0A3B5QM30
      Conserved Domains (1) summary
      pfam00992
      Location:12 → 141
      Troponin
    Nucleotide Protein Strain
    Heading Accession and Version

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