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    chrne cholinergic receptor, nicotinic, epsilon [ Amphiprion ocellaris (clown anemonefish) ]

    Gene ID: 111577653, updated on 18-Jun-2024

    Summary

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    Gene symbol
    chrne
    Gene description
    cholinergic receptor, nicotinic, epsilon
    See related
    Ensembl:ENSAOCG00000009539
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amphiprion ocellaris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
    Orthologs
    zebrafish all
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    Genomic context

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    See chrne in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 14 NC_072779.1 (15344449..15354241, complement)
    101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019373082.1 (435800..445640)

    Chromosome 14 - NC_072779.1Genomic Context describing neighboring genes Neighboring gene misshapen-like kinase 1 Neighboring gene phospholipase D2 Neighboring gene glycolipid transfer protein domain containing 2b Neighboring gene ATPase Na+/K+ transporting subunit beta 2b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit epsilon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2253959v1 Primary Assembly

    Genomic

    1. NC_072779.1 Reference ASM2253959v1 Primary Assembly

      Range
      15344449..15354241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023284025.3 → XP_023139793.1  acetylcholine receptor subunit epsilon

      UniProtKB/TrEMBL
      A0A3Q1AWR1
      Related
      ENSAOCP00000076297.1, ENSAOCT00000065465.1
      Conserved Domains (2) summary
      pfam02931
      Location:29 → 245
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:252 → 495
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    Nucleotide Protein
    Heading Accession and Version

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