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    SGCD sarcoglycan delta [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

    Gene ID: 111547154, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SGCD
    Gene description
    sarcoglycan delta
    See related
    Ensembl:ENSPTEG00000014581
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Piliocolobus tephrosceles
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
    Orthologs
    human mouse all
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    Genomic context

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    See SGCD in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current ASM277652v3 (GCF_002776525.3) 4 NC_045437.1 (133868567..134918046, complement)
    100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317447.1 (326472..1365852)

    Chromosome 4 - NC_045437.1Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase G pseudogene Neighboring gene CST complex subunit STN1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM277652v3

    Genomic

    1. NC_045437.1 Reference ASM277652v3

      Range
      133868567..134918046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023218788.1 → XP_023074556.1  delta-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A8C9GYU5
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 277
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_023218786.2 → XP_023074554.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A8C9GYU5, A0A8C9H091
      Related
      ENSPTEP00000012990.1
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_023218787.1 → XP_023074555.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A8C9GYU5, A0A8C9H091
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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