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    LOC111492279 zinc finger protein CONSTANS-LIKE 4-like [ Cucurbita maxima (winter squash) ]

    Gene ID: 111492279, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111492279
    Gene description
    zinc finger protein CONSTANS-LIKE 4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111492279 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272033.1 (3240735..3242091, complement)

    NW_019272033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111492466 Neighboring gene uncharacterized LOC111492468 Neighboring gene protein GLUTAMINE DUMPER 5-like Neighboring gene uncharacterized protein At1g32220, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272033 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of photoperiodism, flowering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272033.1 Reference Cmax_1.0

      Range
      3240735..3242091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023141567.1 → XP_022997335.1  zinc finger protein CONSTANS-LIKE 4-like

      UniProtKB/TrEMBL
      A0A6J1K9B3
      Conserved Domains (2) summary
      cd00021
      Location:5 → 48
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      pfam06203
      Location:276 → 318
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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