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    LOC111484096 plant UBX domain-containing protein 4 [ Cucurbita maxima (winter squash) ]

    Gene ID: 111484096, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111484096
    Gene description
    plant UBX domain-containing protein 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111484096 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272025.1 (3538617..3541650, complement)

    NW_019272025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized membrane protein YuiD-like Neighboring gene CSC1-like protein At3g21620 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial-like Neighboring gene 50S ribosomal protein L30-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272025 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear membrane reassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plant UBX domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272025.1 Reference Cmax_1.0

      Range
      3538617..3541650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023130545.1 → XP_022986313.1  plant UBX domain-containing protein 4

      UniProtKB/TrEMBL
      A0A6J1JG59
      Conserved Domains (3) summary
      smart00553
      Location:224 → 316
      SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
      pfam14555
      Location:21 → 57
      UBA_4; UBA-like domain
      cl00155
      Location:342 → 416
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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