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    LOC111478733 probable pectate lyase 12 [ Cucurbita maxima (winter squash) ]

    Gene ID: 111478733, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111478733
    Gene description
    probable pectate lyase 12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111478733 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272020.1 (1399054..1402405)

    NW_019272020.1Genomic Context describing neighboring genes Neighboring gene alpha carbonic anhydrase 7-like Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272020 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectate lyase 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272020.1 Reference Cmax_1.0

      Range
      1399054..1402405
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023123162.1 → XP_022978930.1  probable pectate lyase 12

      UniProtKB/TrEMBL
      A0A6J1IRN3
      Conserved Domains (1) summary
      smart00656
      Location:149 → 343
      Amb_all; Amb_all domain
    Nucleotide Protein
    Heading Accession and Version

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