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    LOC111478601 30S ribosomal protein S5, chloroplastic-like [ Cucurbita maxima (winter squash) ]

    Gene ID: 111478601, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111478601
    Gene description
    30S ribosomal protein S5, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111478601 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272020.1 (1105071..1107315)

    NW_019272020.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein DOF1.4 Neighboring gene B3 domain-containing transcription factor LEC2 Neighboring gene VQ motif-containing protein 4-like Neighboring gene non-classical arabinogalactan protein 31-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272020 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    30S ribosomal protein S5, chloroplastic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272020.1 Reference Cmax_1.0

      Range
      1105071..1107315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023122965.1 → XP_022978733.1  30S ribosomal protein S5, chloroplastic-like

      UniProtKB/TrEMBL
      A0A6J1IU44
      Conserved Domains (1) summary
      PRK00550
      Location:136 → 304
      rpsE; 30S ribosomal protein S5; Validated
    Nucleotide Protein
    Heading Accession and Version

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