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    LOC111468538 methyl-CpG-binding domain protein 4-like protein [ Cucurbita maxima (winter squash) ]

    Gene ID: 111468538, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111468538
    Gene description
    methyl-CpG-binding domain protein 4-like protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111468538 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272018.1 (375491..378690)

    NW_019272018.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111468804 Neighboring gene partner of Y14 and mago-like Neighboring gene sister-chromatid cohesion protein 3 Neighboring gene uncharacterized LOC111469263

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272018 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyl-CpG-binding domain protein 4-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272018.1 Reference Cmax_1.0

      Range
      375491..378690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023113789.1 → XP_022969557.1  methyl-CpG-binding domain protein 4-like protein isoform X1

      UniProtKB/TrEMBL
      A0A6J1HWM5
      Conserved Domains (2) summary
      cl26830
      Location:290 → 475
      AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]
      cl27658
      Location:353 → 441
      HHH; Helix-hairpin-helix motif

    2. XM_023113793.1 → XP_022969561.1  methyl-CpG-binding domain protein 4-like protein isoform X2

      UniProtKB/TrEMBL
      A0A6J1HY54
    Nucleotide Protein
    Heading Accession and Version

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