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    LOC111498566 riboflavin biosynthesis protein PYRR, chloroplastic-like [ Cucurbita maxima (winter squash) ]

    Gene ID: 111498566, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111498566
    Gene description
    riboflavin biosynthesis protein PYRR, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111498566 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272018.1 (2357511..2362404)

    NW_019272018.1Genomic Context describing neighboring genes Neighboring gene putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 Neighboring gene isopentenyl-diphosphate Delta-isomerase I Neighboring gene probable protein phosphatase 2C 33 Neighboring gene serine carboxypeptidase-like 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272018 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables diaminohydroxyphosphoribosylaminopyrimidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in riboflavin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    riboflavin biosynthesis protein PYRR, chloroplastic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272018.1 Reference Cmax_1.0

      Range
      2357511..2362404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023149859.1 → XP_023005627.1  riboflavin biosynthesis protein PYRR, chloroplastic-like

      UniProtKB/TrEMBL
      A0A6J1KTN5
      Conserved Domains (2) summary
      cd15457
      Location:433 → 587
      NADAR; Escherichia coli swarming motility protein YbiA and related proteins
      cl26022
      Location:45 → 399
      MafB19-deam; MafB19-like deaminase
    Nucleotide Protein
    Heading Accession and Version

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