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    LOC111437562 protein FAR-RED ELONGATED HYPOCOTYL 3 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111437562, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111437562
    Gene description
    protein FAR-RED ELONGATED HYPOCOTYL 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111437562 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268580.1 (660731..666209, complement)

    NW_019268580.1Genomic Context describing neighboring genes Neighboring gene VQ motif-containing protein 22-like Neighboring gene protein FAR-RED IMPAIRED RESPONSE 1-like Neighboring gene probable protein S-acyltransferase 19 Neighboring gene gamma aminobutyrate transaminase 1, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268580 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR-RED ELONGATED HYPOCOTYL 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268580.1 Reference Cmos_1.0

      Range
      660731..666209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023075575.1 → XP_022931343.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    2. XM_023075577.1 → XP_022931345.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    3. XM_023075579.1 → XP_022931347.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    4. XM_023075581.1 → XP_022931349.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    5. XM_023075578.1 → XP_022931346.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    6. XM_023075582.1 → XP_022931350.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    7. XM_023075574.1 → XP_022931342.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain

    8. XM_023075576.1 → XP_022931344.1  protein FAR-RED ELONGATED HYPOCOTYL 3

      UniProtKB/TrEMBL
      A0A6J1ETD2
      Conserved Domains (1) summary
      cl28060
      Location:1 → 847
      FAR1; FAR1 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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