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    LOC111436171 transcription elongation factor SPT6 homolog [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111436171, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111436171
    Gene description
    transcription elongation factor SPT6 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111436171 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268568.1 (161863..176933)

    NW_019268568.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase SUVR4-like Neighboring gene probable peroxygenase 3 Neighboring gene splicing factor 3B subunit 2-like Neighboring gene peroxisome biogenesis protein 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268568 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT6 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268568.1 Reference Cmos_1.0

      Range
      161863..176933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023073882.1 → XP_022929650.1  transcription elongation factor SPT6 homolog

      UniProtKB/TrEMBL
      A0A6J1EUY6
      Conserved Domains (3) summary
      pfam14632
      Location:53 → 124
      SPT6_acidic; Acidic N-terminal SPT6
      pfam14633
      Location:1210 → 1424
      SH2_2; SH2 domain
      cl28255
      Location:327 → 1192
      Pnp; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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