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    LOC111443571 polynucleotide 3'-phosphatase ZDP [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111443571, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111443571
    Gene description
    polynucleotide 3'-phosphatase ZDP
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111443571 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268521.1 (2810764..2814424)

    NW_019268521.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111443565 Neighboring gene uncharacterized LOC111443568 Neighboring gene uncharacterized LOC111443567 Neighboring gene rab3 GTPase-activating protein non-catalytic subunit Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268521 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polynucleotide 3'-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polynucleotide 3'-phosphatase ZDP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268521.1 Reference Cmos_1.0

      Range
      2810764..2814424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023081439.1 → XP_022937207.1  polynucleotide 3'-phosphatase ZDP isoform X2

      UniProtKB/TrEMBL
      A0A6J1FAH6
      Conserved Domains (3) summary
      pfam00645
      Location:17 → 92
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      cd01625
      Location:172 → 335
      HAD_PNP; polynucleotide 3'-phosphatase domain similar to the phosphatase domain of the bifunctional enzyme polynucleotide 5'-kinase/3'-phosphatase
      cl27333
      Location:9 → 171
      PARP_reg; Poly(ADP-ribose) polymerase, regulatory domain

    2. XM_023081438.1 → XP_022937206.1  polynucleotide 3'-phosphatase ZDP isoform X1

      UniProtKB/TrEMBL
      A0A6J1F9Q9
      Conserved Domains (3) summary
      pfam00645
      Location:50 → 125
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      cd01625
      Location:205 → 368
      HAD_PNP; polynucleotide 3'-phosphatase domain similar to the phosphatase domain of the bifunctional enzyme polynucleotide 5'-kinase/3'-phosphatase
      cl27333
      Location:42 → 204
      PARP_reg; Poly(ADP-ribose) polymerase, regulatory domain
    Nucleotide Protein
    Heading Accession and Version

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