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    LOC111441430 PAN domain-containing protein At5g03700 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111441430, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111441430
    Gene description
    PAN domain-containing protein At5g03700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111441430 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268520.1 (5952769..5954735, complement)

    NW_019268520.1Genomic Context describing neighboring genes Neighboring gene fructose-bisphosphate aldolase 6, cytosolic-like Neighboring gene uncharacterized LOC111442047 Neighboring gene uncharacterized LOC111442110 Neighboring gene flocculation protein FLO11-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268520 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PAN domain-containing protein At5g03700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268520.1 Reference Cmos_1.0

      Range
      5952769..5954735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023078418.1 → XP_022934186.1  PAN domain-containing protein At5g03700

      UniProtKB/TrEMBL
      A0A6J1F151
      Conserved Domains (3) summary
      pfam00954
      Location:263 → 314
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:90 → 190
      B_lectin; D-mannose binding lectin
      cl00112
      Location:334 → 416
      PAN_APPLE; PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech ...
    Nucleotide Protein
    Heading Accession and Version

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