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    LOC111436239 two-component response regulator-like APRR1 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111436239, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111436239
    Gene description
    two-component response regulator-like APRR1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111436239 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268519.1 (877871..881448)

    NW_019268519.1Genomic Context describing neighboring genes Neighboring gene putative invertase inhibitor Neighboring gene protein NEN1-like Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial-like Neighboring gene probable xyloglucan 6-xylosyltransferase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268519 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator-like APRR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268519.1 Reference Cmos_1.0

      Range
      877871..881448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023073979.1 → XP_022929747.1  two-component response regulator-like APRR1 isoform X1

      UniProtKB/TrEMBL
      A0A6J1ENK1
      Conserved Domains (3) summary
      cd00156
      Location:36 → 145
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:479 → 522
      CCT; CCT motif
      cl26036
      Location:79 → 248
      YesN; Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]

    2. XM_023073988.1 → XP_022929756.1  two-component response regulator-like APRR1 isoform X2

      UniProtKB/TrEMBL
      A0A6J1EP19
      Conserved Domains (3) summary
      cd00156
      Location:36 → 145
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:466 → 509
      CCT; CCT motif
      cl26036
      Location:79 → 248
      YesN; Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]

    3. XM_023073995.1 → XP_022929763.1  two-component response regulator-like APRR1 isoform X3

      UniProtKB/TrEMBL
      A0A6J1ET52
      Conserved Domains (3) summary
      cd00156
      Location:11 → 99
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam06203
      Location:433 → 476
      CCT; CCT motif
      cl26036
      Location:33 → 202
      YesN; Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]
    Nucleotide Protein
    Heading Accession and Version

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