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    LOC111435917 G patch domain-containing protein TGH [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111435917, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111435917
    Gene description
    G patch domain-containing protein TGH
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111435917 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268519.1 (1266088..1276700)

    NW_019268519.1Genomic Context describing neighboring genes Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene protein Dr1 homolog Neighboring gene probable calcium-binding protein CML15 Neighboring gene probable acyl-activating enzyme 17, peroxisomal

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268519 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G patch domain-containing protein TGH

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268519.1 Reference Cmos_1.0

      Range
      1266088..1276700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023073554.1 → XP_022929322.1  G patch domain-containing protein TGH

      UniProtKB/TrEMBL
      A0A6J1EMQ9
      Conserved Domains (2) summary
      pfam01805
      Location:412 → 459
      Surp; Surp module
      pfam07713
      Location:39 → 120
      DUF1604; Protein of unknown function (DUF1604)

    2. XM_023073568.1 → XP_022929336.1  G patch domain-containing protein TGH

      UniProtKB/TrEMBL
      A0A6J1EMQ9
      Conserved Domains (2) summary
      pfam01805
      Location:412 → 459
      Surp; Surp module
      pfam07713
      Location:39 → 120
      DUF1604; Protein of unknown function (DUF1604)

    3. XM_023073546.1 → XP_022929314.1  G patch domain-containing protein TGH

      UniProtKB/TrEMBL
      A0A6J1EMQ9
      Conserved Domains (2) summary
      pfam01805
      Location:412 → 459
      Surp; Surp module
      pfam07713
      Location:39 → 120
      DUF1604; Protein of unknown function (DUF1604)

    4. XM_023073528.1 → XP_022929296.1  G patch domain-containing protein TGH

      UniProtKB/TrEMBL
      A0A6J1EMQ9
      Conserved Domains (2) summary
      pfam01805
      Location:412 → 459
      Surp; Surp module
      pfam07713
      Location:39 → 120
      DUF1604; Protein of unknown function (DUF1604)

    5. XM_023073537.1 → XP_022929305.1  G patch domain-containing protein TGH

      UniProtKB/TrEMBL
      A0A6J1EMQ9
      Conserved Domains (2) summary
      pfam01805
      Location:412 → 459
      Surp; Surp module
      pfam07713
      Location:39 → 120
      DUF1604; Protein of unknown function (DUF1604)

    RNA

    1. XR_002709158.1 RNA Sequence

    2. XR_002709157.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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