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    rbsn rabenosyn, RAB effector [ Danio rerio (zebrafish) ]

    Gene ID: 569240, updated on 12-Sep-2024

    Summary

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    Gene symbol
    rbsn
    Gene description
    rabenosyn, RAB effector
    See related
    Ensembl:ENSDARG00000078215
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zfyve20
    Orthologs
    human mouse all
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    Genomic context

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    See rbsn in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (53149967..53169450, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (53271388..53290858, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 2, group C, member 2 Neighboring gene mitochondrial ribosomal protein S25 Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 4 Neighboring gene gamma-aminobutyric acid type A receptor subunit delta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rabenosyn-5
    Names
    zinc finger, FYVE domain containing 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      53149967..53169450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692614.7 → XP_697706.2  rabenosyn-5

      UniProtKB/TrEMBL
      A0A8N7T814
      Related
      ENSDARP00000102003.4, ENSDART00000114683.4
      Conserved Domains (3) summary
      cd15716
      Location:153 → 199
      FYVE_RBNS5; FYVE domain found in FYVE finger-containing Rab5 effector protein rabenosyn-5 (Rbsn-5) and similar proteins
      pfam11464
      Location:458 → 497
      Rbsn; Rabenosyn Rab binding domain
      pfam16601
      Location:595 → 736
      NPF; Rabosyn-5 repeating NPF sequence-motif

    2. XM_068223241.1 → XP_068079342.1  rabenosyn-5

    Nucleotide Protein Strain
    Heading Accession and Version

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