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    cldn34a claudin 34a [ Danio rerio (zebrafish) ]

    Gene ID: 568833, updated on 2-Nov-2024

    Summary

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    Official Symbol
    cldn34aprovided by ZNC
    Official Full Name
    claudin 34aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130819-3
    See related
    Ensembl:ENSDARG00000087805 AllianceGenome:ZFIN:ZDB-GENE-130819-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cldn34; gb:eh493890
    Summary
    Predicted to enable structural molecule activity. Predicted to be located in bicellular tight junction and membrane. Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See cldn34a in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (30456783..30464786)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (30469849..30478430)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 7 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene shroom family member 2a Neighboring gene claudin 33b Neighboring gene WWC family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic revision of the claudin gene family. Baltzegar DA, et al. Mar Genomics, 2013 Sep. PMID 23726886
    2. Zebrafish etv2 knock-in line labels vascular endothelial and blood progenitor cells. Chestnut B, et al. Dev Dyn, 2020 Feb. PMID 31705559, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    claudin-34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      30456783..30464786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692189.10 → XP_697281.2  claudin-34

      UniProtKB/TrEMBL
      A0A8N7TDY7, E7FDA9
      Related
      ENSDARP00000104954.1, ENSDART00000121492.3
      Conserved Domains (1) summary
      cl21598
      Location:20 → 194
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
    Nucleotide Protein Strain
    Heading Accession and Version

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